Pvi-MIR408a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
GGGGG   T      -------T    A      T       A   T    T     CAT     AAAAAA   - CG      -  A TGCGAAAGAAGAGGGAGAGGGAGTTTG
     TGG CTGGAT        GGAG CAGGGA GAGGCAG GCA GGGA GGGGC   CAACA      AAA C  TTTCTT CC C                           
     ||| ||||||        |||| |||||| ||||||| ||| |||| |||||   |||||      ||| |  |||||| || |                           T
     ACC GGCCTA        CCTC GTCCCT CTCCGTC CGT CCCT CCTCG   GTTGT      CGC T  CGAGAG TA G                           
        C      TACTACCC    G      T       A   C    C     -TT     ---GGT   C --      T  - AAAAGACACGGACTACTTCTTGGAGTG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.1NG406200.1 0.5 0 NA
Pavir.9KG016900.1 1.0 NA NA
Pavir.6KG319400.1 1.5 1 NA
Pavir.6NG279000.1 1.5 0 NA
Pavir.9KG504800.1 1.5 0 NA
Pavir.9NG140000.1 1.5 0 NA
Pavir.9NG669700.1 1.5 NA NA
Pavir.1KG497800.1 2.0 1 NA
Pavir.3KG124800.1 2.0 NA NA
Pavir.4KG204400.1 2.0 1 NA
Pavir.7KG120600.1 2.0 NA NA
Pavir.7NG348200.1 2.0 1 NA
Pavir.9NG138700.1 2.0 NA NA
Pavir.9NG139600.1 2.0 1 NA
Pavir.9NG139900.1 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference