Pvi-MIR408c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
GAAGGT  T      --------T    A      T       A   T    T     CAT     AAAAAAAAAAACGTTTCTTCCACT    AA   TGCTTGTTCGCTTGCCTGCGAAATAGGGGAGGCAGTT
      GG CTGGAT         GGAG CAGGGA GAGGCAG GCA GGGA GGGGC   CAACA                        GCGA  ACA                                     
      || ||||||         |||| |||||| ||||||| ||| |||| |||||   |||||                        ||||  |||                                      
      CC GGCCTG         CCTC GTCCCT CTCCGTC CGT CCCT CCTCG   GTTGT                        CGCC  TCG                                     
        C      CACTACCCC    G      T       A   C    C     -TT     ---------------------GGT    --   AGAGTTGGAAAAGACACGGACTACTTCTTGGAGAGTG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.1NG406200.1 0.5 0 NA
Pavir.9KG016900.1 1.0 NA NA
Pavir.6KG319400.1 1.5 1 NA
Pavir.6NG279000.1 1.5 0 NA
Pavir.9KG504800.1 1.5 0 NA
Pavir.9NG140000.1 1.5 0 NA
Pavir.9NG669700.1 1.5 NA NA
Pavir.1KG497800.1 2.0 1 NA
Pavir.3KG124800.1 2.0 NA NA
Pavir.4KG204400.1 2.0 1 NA
Pavir.7KG120600.1 2.0 NA NA
Pavir.7NG348200.1 2.0 1 NA
Pavir.9NG138700.1 2.0 NA NA
Pavir.9NG139600.1 2.0 1 NA
Pavir.9NG139900.1 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference