PmiREN: Plant microRNA Encyclopedia

Pvi-MIR528c

Basic info.

miRNA locus ID
Pvi-MIR528c

miRNA locus accession
PmiREN016438

Organism
Panicum virgatum

Genomic location
Pvi-Chr09N 120070864 120070991 -

Comments
A member of family MIR528

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TCTGGC           C             T   G     C  -   GTTT   TGGA   CGAC
        TGTAGCAGCAG AGTGGAAGGGGCA GCA AGGAG AG GAG    GGT    AGC    
        ||||||||||| ||||||||||||| ||| ||||| || |||    |||    |||     
        GCATTGTCGTC TTACCTTCTCCGT CGT TCCTC TC CTC    CCA    TCG    
TTTGTATC           C             C   G     -  G   GCTC   ----   TGTT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Pavir.9KG551200.1	0.0	0	NA
Pavir.9NG759800.1	0.0	0	NA
Pavir.2NG336500.1	2.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Pvi-MIR528c

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