Pvi-MIR535b

Basic info.

• miRNA locus ID
• Pvi-MIR535b

• miRNA locus accession
• PmiREN016442

• Organism
• Panicum virgatum

• Genomic location
• Pvi-scaffold_1734  17440  17565  -

• Comments
• A member of family MIR535

• Confidence level
• 

Secondary strurture and sequence

   GGTT     C  AC           A  A   A        C      G        G  ATG
       TGGTG TG  GGGCGGTGACA CG GAG GAGCACGC GGTGCG CCGTCACG AG   
       ||||| ||  ||||||||||| || ||| |||||||| |||||| |||||||| ||    
       ACCAT AC  TCCGTCACTGT GC CTC CTCGTGCG TCATGC GGCGGTGC TC   
TTCATGT     C  -C           C  C   C        T      -        -  GGT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference