Pvi-MIR827

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
GTAA    -  -  -C          T                  A   -----     TCCGGTGCATGGATCATGGATTGCGGTC
    TGCA GC TC  GAACTTGTTT GTTGGTGGTCATCTAACC TGC     TCCGA                            
    |||| || ||  |||||||||| |||||||||||||||||| |||     |||||                            A
    ACGT CG AG  CTTGAACAAA CGACTACCAGTAGATTGG GCG     TCTGG                            
 AAG    A  G  TA          -                  C   TGCGT     TACTAGTCAGGTACTGCCAGTACCCAGT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Pavir.1NG337600.1 1.0 1 NA
Pavir.1NG421700.1 1.0 NA NA
Pavir.7KG293200.1 1.5 1 NA
Pavir.7NG296900.1 1.5 1 NA
Pavir.J630500.1 1.5 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference