PmiREN: Plant microRNA Encyclopedia

Sit-MIR160c

Basic info.

miRNA locus ID
Sit-MIR160c

miRNA locus accession
PmiREN018624

Organism
Setaria italica

Genomic location
Sit-scaffold_4 38135875 38135998 -

Comments
A member of family MIR160

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

GACCAC    --    ---CG       C       C          A   -      C  C -  T
      GATC  GGCT     TGTGTGC TGGCTCC TGTATGCCAC CAT GTATCC AA C CG 
      ||||  ||||     ||||||| ||||||| |||||||||| ||| |||||| || | || G
      CTAG  CCGG     ACGTACG ACCGAGG ACGTGCGGTG GTG CGTAGG TT G GC 
   CTA    TA    ACAAG       A       A          G   T      -  A T  G

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Seita.4G257800.1	0.0	NA	NA
Seita.7G169600.1	0.0	NA	NA
Seita.9G219800.1	0.0	NA	NA
Seita.3G003300.1	0.5	NA	NA
Seita.1G241500.1	1.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Sit-MIR160c

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