Sit-MIR160e

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
AA     T  AAA      ----    C       C         C     -   CT      TCTCCCA  TGT
  AGAGG GA   GGGGAT    ATGC TGGCTCC TGTATGCCA TCGCA TAG  GCCAGC       GC   
  ||||| ||   ||||||    |||| ||||||| ||||||||| ||||| |||  ||||||       ||   G
  TCTCT CT   TCTCTA    TACG ACCGAGG GCGTGCGGT GGCGT ATC  CGGTCG       TG   
 C     -  CTC      CCAG    A       A         A     C   -T      TTGCATG  CCG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Seita.4G257800.1 0.0 NA NA
Seita.7G169600.1 0.0 NA NA
Seita.9G219800.1 0.0 NA NA
Seita.3G003300.1 0.5 NA NA
Seita.1G241500.1 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

Link

Reference