PmiREN: Plant microRNA Encyclopedia

Sit-MIR164e

Basic info.

miRNA locus ID
Sit-MIR164e

miRNA locus accession
PmiREN018632

Organism
Setaria italica

Genomic location
Sit-scaffold_1 39787238 39787368 -

Comments
A member of family MIR164

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   GA        C  A  C  C        C  G         -          -  ---    C   C
     GGGGCGAG AA CC TG TGGAGAAG AG GCACGTGCT CGGTCGATCG GC   CGGC GGG 
     |||||||| || || || |||||||| || ||||||||| |||||||||| ||   |||| ||| A
     CCCCGCTC TT GG AC ACCTCTTC TC CGTGCACGA GCTAGCTGGT CG   GTCG CCC 
GGCTG        -  A  T  T        C  G         C          A  TAC    -   G

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Seita.3G386200.1	1.0	NA	NA
Seita.4G263400.1	1.0	NA	NA
Seita.1G209000.1	1.5	2	NA
Seita.7G124900.1	1.5	2	NA
Seita.6G032700.1	2.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Sit-MIR164e

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