PmiREN: Plant microRNA Encyclopedia

Sit-MIR164f

Basic info.

miRNA locus ID
Sit-MIR164f

miRNA locus accession
PmiREN018633

Organism
Setaria italica

Genomic location
Sit-scaffold_9 48855941 48856090 -

Comments
A member of family MIR164

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

          -  T    AG        A CA                    AGTCT   CC    -C    C     CG
 TTGGTGTGC CC GTGC  GGTGGAGA G  GGACACGTGAGCGACCATCC     CAA  GCCG  GCCG GACGC  
 ||||||||| || ||||  |||||||| |  ||||||||||||||||||||     |||  ||||  |||| |||||  T
 GGCTATACG GG CACG  CCACCTCT C  CCTGTGTACTCGCTGGTGGG     GTT  TGGC  CGGC CTGTG  
A         C  T    AG        C TG                    -----   --    TT    -     CG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Seita.1G209000.1	1.5	1	NA
Seita.6G032700.1	1.5	NA	NA
Seita.7G124900.1	1.5	1	NA
Seita.2G429700.1	2.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Sit-MIR164f

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