PmiREN: Plant microRNA Encyclopedia

Sit-MIR166e

Basic info.

miRNA locus ID
Sit-MIR166e

miRNA locus accession
PmiREN018638

Organism
Setaria italica

Genomic location
Sit-scaffold_3 46534317 46534455 -

Comments
A member of family MIR166

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GAGGGG    GG    CT         G   A   A          GT     A  -ATTAG     CC
        GGCA  GTGT  GGAATGGAG CTG TCC AGATCCTCGG  GCGAC GC      GAAAG  
        ||||  ||||  ||||||||| ||| ||| ||||||||||  ||||| ||      |||||   
        TCGT  CACA  CCTTACTTC GAC AGG TCTAGGGGCC  CGTTG TG      CTTTC  
GTTGGTCC    GA    CT         G   C   C          AT     G  CTTTGG     CA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Seita.9G529300.1	1.5	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Sit-MIR166e

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