Sit-MIR167d

Basic info.

• miRNA locus ID
• Sit-MIR167d

• miRNA locus accession
• PmiREN018648

• Organism
• Setaria italica

• Genomic location
• Sit-scaffold_5  38247040  38247189  -

• Comments
• A member of family MIR167

• Confidence level
• 

Secondary strurture and sequence

  GTGTGTGCACATTA     C         -             T    TT  T     ----   CCT   CC  GT
                AGCAG TGAAGCTGC CAGCATGATCTGA ATCT  GT TTTAA    GCT   CCT  TA  
                ||||| ||||||||| ||||||||||||| ||||  || |||||    |||   |||  ||   
                TCGTC ACTTTGACG GTCGTGCTAGACT TAGA  CG AGGTT    CGG   GGA  GT  
AGAGACACGAGGTTAC     C         T             -    TC  T     TCAA   TTT   AA  AG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• Link To PNDB

Reference

• No reference