Sit-MIR167h

Basic info.

• miRNA locus ID
• Sit-MIR167h

• miRNA locus accession
• PmiREN018652

• Organism
• Setaria italica

• Genomic location
• Sit-scaffold_4  38545942  38546067  -

• Comments
• A member of family MIR167

• Confidence level
• 

Secondary strurture and sequence

 C          -     A  -T         C             --T   CAAACG      TCTA
  TTTTGCTGGT GTGAG GG  TGAAGCTGC AGCATGATCTGGT   GCT      CCGGCC    
  |||||||||| ||||| ||  ||||||||| |||||||||||||   |||      ||||||     
  GAAACGATCA CGCTC CC  ACTTCGATG TTGTACTAGACCA   CGA      GGTCGG    
AC          A     -  TC         -             CTT   ---AGA      TGAA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• Link To PNDB

Reference

• No reference