Sit-MIR167j

Basic info.

• miRNA locus ID
• Sit-MIR167j

• miRNA locus accession
• PmiREN018654

• Organism
• Setaria italica

• Genomic location
• Sit-scaffold_9  3268729  3268870  +

• Comments
• A member of family MIR167

• Confidence level
• 

Secondary strurture and sequence

GAAC       ----     T      A      --             TCT G        C     ---    AG
    TGCCCAA    GGGAA GAGTGA GCTGCC  AGCATGATCTAGC   G GTGATCAC GAGAG   GAAC  
    |||||||    ||||| |||||| ||||||  |||||||||||||   | |||||||| |||||   ||||   
    ACGGGTT    CCCTT TTCACT CGACGG  TCGTACTGGATCG   C TACTGGTG TTCTC   CTTG  
  AC       GCTA     C      C      CG             TTC G        -     GAG    AA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• Link To PNDB

Reference

• No reference