PmiREN: Plant microRNA Encyclopedia

Sit-MIR171a

Basic info.

miRNA locus ID
Sit-MIR171a

miRNA locus accession
PmiREN018672

Organism
Setaria italica

Genomic location
Sit-scaffold_6 2734897 2735017 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GTGGGCGCGC       G                    C      -CT  G     -  G
            GGCGACG GGTATTGGCGCGGTTCAATT GAGAGC   GC CCCCT CC 
            ||||||| |||||||||||||||||||| ||||||   || ||||| || G
            CCGCTGC CTATAACCGTGCCGAGTTAG CTCTCG   CG GGGGA GG 
GTTAGTTAGCTT       A                    T      TCT  G     C  A

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Seita.1G262900.1	0.5	NA	NA
Seita.4G003600.1	0.5	NA	NA
Seita.9G330300.1	1.0	NA	NA
Seita.9G105100.1	1.5	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Sit-MIR171a

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