PmiREN: Plant microRNA Encyclopedia

Sit-MIR172a

Basic info.

miRNA locus ID
Sit-MIR172a

miRNA locus accession
PmiREN018679

Organism
Setaria italica

Genomic location
Sit-scaffold_1 41478909 41479040 -

Comments
A member of family MIR172

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  AAC   C         A         C           A    CACC     CTCA  TG     AC
     AGT GGTGCTTGC GGTGCAGCA CATCAAGATTC CATC    TCATC    GT  ATGCT  
     ||| ||||||||| ||||||||| ||||||||||| ||||    |||||    ||  |||||   
     TCA TCACGGACG CTACGTCGT GTAGTTCTAAG GTAG    AGTAG    CA  TACGA  
ACTAC   C         A         A           A    ----     TCCA  CG     CA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Seita.2G091100.1	0.5	0	NA
Seita.3G044600.1	0.5	0	NA
Seita.9G035800.1	0.5	NA	NA
Seita.4G204700.1	1.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Sit-MIR172a

>