PmiREN: Plant microRNA Encyclopedia

Sit-MIR172c

Basic info.

miRNA locus ID
Sit-MIR172c

miRNA locus accession
PmiREN018681

Organism
Setaria italica

Genomic location
Sit-scaffold_5 47103360 47103504 -

Comments
A member of family MIR172

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   TC    GG        TGGC                  A     -   --       -   -------  T   ATC
     AGCC  TGATTTTC    GTGGCATCATCAAGATTC CACAC TGC  GCGCGTG ACG       AC GCC   
     ||||  ||||||||    |||||||||||||||||| ||||| |||  ||||||| |||       || |||    
     TCGG  ACTAAAGG    CGTCGTAGTAGTTCTAAG GTGTG ACG  TGTGTAT TGT       TG CGG   
TACTA    GA        -TTA                  G     T   TA       G   ATGTCTA  C   CCC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Seita.4G204700.1	0.5	NA	NA
Seita.2G091100.1	1.0	0	NA
Seita.3G044600.1	1.0	0	NA
Seita.9G035800.1	1.0	NA	NA
Seita.7G085200.1	1.5	2	NA
Seita.7G263000.1	1.5	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Sit-MIR172c

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