PmiREN: Plant microRNA Encyclopedia

Sit-MIR390

Basic info.

miRNA locus ID
Sit-MIR390

miRNA locus accession
PmiREN018682

Organism
Setaria italica

Genomic location
Sit-scaffold_9 2055343 2055517 +

Comments
A member of family MIR390

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   AG    T       T  T  A         G         CTA   AATCAC     T      A GA        A        TAA
     GGTA GGAACAA CC TG AGCTCAGGA GGATAGCGC   GGA      TAGAT GGAGCC T  GGAGGAAG GATCGAAG   
     |||| ||||||| || || ||||||||| |||||||||   |||      ||||| |||||| |  |||||||| ||||||||   A
     CCAT TCTTGTT GG AC TCGAGTCCT TCTATCGCG   TCT      ATCTG TCTTGG A  TCTCTTTC CTAGCTTC   
ACACA    -       C  C  C         A         AAG   --AACT     -      - AG        C        TCT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Seita.J011200.1	2.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Sit-MIR390

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