Sit-MIR393a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
TCCA   --A  TC        C           C          -CA    C   C     --C   -C    G      AGC
    GGA   GC  GTGGAGGA TCCAAAGGGAT GCATTGATCT   CCTT CGC GCAGC   GCT  GCCG CATGCA   
    |||   ||  |||||||| ||||||||||| ||||||||||   |||| ||| |||||   |||  |||| ||||||    
    CCT   CG  CACCTTTT AGGTTTCCCTA CGTGACTAGG   GGAG GCG CGTCG   CGG  CGGT GTACGT   
CACG   CCG  TT        A           A          ACA    C   -     ATC   AT    -      GCA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Seita.3G037200.1 1.0 NA NA
Seita.7G078300.1 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference