PmiREN: Plant microRNA Encyclopedia

Sit-MIR394

Basic info.

miRNA locus ID
Sit-MIR394

miRNA locus accession
PmiREN018685

Organism
Setaria italica

Genomic location
Sit-scaffold_1 33992667 33992790 +

Comments
A member of family MIR394

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

      T      TGAG      -      TTC           TTGCT   CTT     AAGTCT
   GGG GCTTAC    AGTTCC TTGGCA   TGTCCACCTCC     GAT   GCAGA      
   ||| ||||||    |||||| ||||||   |||||||||||     |||   |||||       
   CCT CGGATG    TCGAGG AACCGT   ACGGGTGGAGG     TTG   TGTCT      
TTC   C      --TG      T      CAT           TTTTT   --T     AAACTC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Seita.5G433500.1	0.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Sit-MIR394

>