Sit-MIR396a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
TTCA     -----       GC                   A     C   CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACTCACACACACACACACACACA   A A  GTCAATTGCGCG
    AGTCC     ATGCCAT  CTTTCCACAGCTTTCTTGA CTTCT TCT                                                                                    CAC C CA            
    |||||     |||||||  ||||||||||||||||||| ||||| |||                                                                                    ||| | ||             
    TCAGG     TACGGTA  GAAGGGTGTCGAAAGAACT GAAGA AGA                                                                                    GTT A AC            
   C     AACAA       AA                   G     -   -----------------------------------------------------------------------------------T   G -  AGGGTTGAACGT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Seita.1G355900.1 0.0 NA NA
Seita.1G355800.1 2.0 2 NA
Seita.4G253200.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference