Sit-MIR396c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
 AGA   - C           C            C          -  G  AATTCGAAGTGGCAGAACAGATTG
    TGG C CTCTTTGCGAT TTCCACAGCTTT TTGAACTGCT GC TG                        
    ||| | ||||||||||| |||||||||||| |||||||||| || ||                         
    ACC G GAGAAACGTTA AGGGTGTCGAAA AACTTGACGA CT AG                        
GTTA   A A           A            T          G  -  CCATCTAGAGGCCGACTTGGGTTC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Seita.1G355900.1 0.0 NA NA
Seita.1G355800.1 2.0 1 NA
Seita.4G253200.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference