Sit-MIR3979

Basic info.

• miRNA locus ID
• Sit-MIR3979

• miRNA locus accession
• PmiREN018702

• Organism
• Setaria italica

• Genomic location
• Sit-scaffold_8  27440216  27440353  +

• Comments
• A member of family MIR3979

• Confidence level
• 

Secondary strurture and sequence

AATT    ---     CT     TCC                       ----------   TAAATCT     GCT
    GGCA   TGGCT  CTTGG   CTCTCTCCCTTGAAGGCTTTCTC          TGG       TGTTG   
    ||||   |||||  |||||   |||||||||||||||||||||||          |||       |||||    
    CCGT   ACCGA  GAACC   GGGAGGGGGGACTTCCGAAAGAG          ACC       ACGAC   
 TGT    GAC     AC     CAA                       TTCTTTCGTG   --TATAC     GCT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference