Sit-MIR398

Basic info.

• miRNA locus ID
• Sit-MIR398

• miRNA locus accession
• PmiREN018703

• Organism
• Setaria italica

• Genomic location
• Sit-scaffold_2  11977306  11977419  -

• Comments
• A member of family MIR398

• Confidence level
• 

Secondary strurture and sequence

  AAC         C   T  A       GA             C  T  C -    CT
     GCAAGGGAG TCC GC GGGGCGA  TGGGAACACATGC GT GC G GGCG  
     ||||||||| ||| || |||||||  ||||||||||||| || || | ||||   
     CGTTCCTTC GGG CG CCCCGCT  ACTCTTGTGTACG CG CG C CCGC  
GCCGC         C   C  C       GG             -  C  C G    TG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• Link To PNDB

Reference

• No reference