PmiREN: Plant microRNA Encyclopedia

Sit-MIR399b

Basic info.

miRNA locus ID
Sit-MIR399b

miRNA locus accession
PmiREN018705

Organism
Setaria italica

Genomic location
Sit-scaffold_3 12484677 12484840 +

Comments
A member of family MIR399

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 TGTGCC    -A      A        A              G -   ----       -CATG  TAGG  C      GG  GG
       GAGC  TGAATT CAGGGTAG TCTCCTTTGGCACG A GGC    ATGCAGC     CA    TA GCTACT  AT  
       ||||  |||||| |||||||| |||||||||||||| | |||    |||||||     ||    || ||||||  ||   
       CTTG  ACTTAG GTCCCGTT AGAGGAAACCGTGC T CCG    TACGTCG     GT    GT CGATGG  TG  
TCAATGT    GC      C        A              G A   ATAA       TAGAA  TAAG  T      AA  GA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Seita.3G150400.1	1.5	NA	NA
Seita.9G233700.1	1.5	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Sit-MIR399b

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