PmiREN: Plant microRNA Encyclopedia

Sit-MIR399c

Basic info.

miRNA locus ID
Sit-MIR399c

miRNA locus accession
PmiREN018706

Organism
Setaria italica

Genomic location
Sit-scaffold_4 28918531 28918660 +

Comments
A member of family MIR399

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

CATT      ----GA    CA   T           C     T   -   CAAA      -- -    GG
    CAGGGT      GAAT  CAG GCGGTTCTCCT TGGCA GGA GGC    GTAGCA  G GCAT  
    ||||||      ||||  ||| ||||||||||| ||||| ||| |||    ||||||  | ||||  A
    GTCCCA      CTTA  GTC CGTTAAGAGGA ACCGT CCT CCG    TATCGT  C CGTA  
  TC      ATATGG    CC   C           A     C   A   ---C      GA A    AC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Seita.3G150400.1	1.5	NA	NA
Seita.9G233700.1	1.5	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Sit-MIR399c

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