Sit-MIR408

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
    AA      TT  ATT    G      T       A   T    T     CAT     GACAAAA  CCGTTTCTTCCACTGCAAAAACATGTTTGTGAGAGGTTTT
      GGTGGT  GG   GGAG CAGGGA GAGGCAG GCA GGGA GGGGC   CAACA       CT                                        
      ||||||  ||   |||| |||||| ||||||| ||| |||| |||||   |||||       ||                                        G
      CCGCCG  CC   CCTC GTCCCT CTCCGTC CGT CCCT CCTCG   GTTGT       GG                                        
ACCCGG      --  GTC    G      T       A   C    C     -TT     -------  CCACCCCCGCCTCGAGAGTTGGAAAAAAAAAAAAAACGGA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Seita.6G187100.1 1.0 0 NA
Seita.4G118400.1 1.5 1 NA
Seita.9G120800.1 1.5 1 NA
Seita.3G402100.1 2.0 NA NA
Seita.9G120700.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference