PmiREN: Plant microRNA Encyclopedia

Sit-MIR5179

Basic info.

miRNA locus ID
Sit-MIR5179

miRNA locus accession
PmiREN018708

Organism
Setaria italica

Genomic location
Sit-scaffold_1 15037118 15037328 +

Comments
A member of family MIR5179

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 ATCTGCATCAG   -A       -    T            A  AAT     TGA  C            CTT          A CTCGTCCAAATCCCAAGGTAGA
            GAG  GGGTGTT TTGC CAAGACCGCGCA CC   CCATA   CA CGCATCGCTGTC   GCCTATCATT T                      
            |||  ||||||| |||| |||||||||||| ||   |||||   || ||||||||||||   |||||||||| |                       
            CTC  CCCGCAA AACG GTTCTGGTGTGT GG   GGTAT   GT GCGTAGCGGCAG   TGGATAGGTA T                      
CCTCCCTTTACG   GG       T    C            C  ACT     -TG  C            CTC          - TGGTGTACGTAGAAGAAGAGGA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Seita.4G277600.1	0.0	0	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Sit-MIR5179

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