Sit-MIR535

Basic info.

• miRNA locus ID
• Sit-MIR535

• miRNA locus accession
• PmiREN018712

• Organism
• Setaria italica

• Genomic location
• Sit-scaffold_8  21627019  21627144  +

• Comments
• A member of family MIR535

• Confidence level
• 

Secondary strurture and sequence

  AGCTTGGTCCTGGCCGGC          A   A        C      G         T AGG
                    GGTGACAACG GAG GAGCACGC GGTGCG CCGTCACGG G   
                    |||||||||| ||| |||||||| |||||| ||||||||| |    
                    CCACTGTTGC CTC CTCGTGCG TCATGC GGCGGTGCC C   
CATTACACACTGTCACTCAG          C   C        T      -         - GGT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• Link To PNDB

Reference

• No reference