PmiREN: Plant microRNA Encyclopedia

Spo-MIR164

Basic info.

miRNA locus ID
Spo-MIR164

miRNA locus accession
PmiREN020144

Organism
Spirodela polyrhiza

Genomic location
Spo-pseudo29 11849 11964 -

Comments
A member of family MIR164

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

     C       C  GA  C  C        CA              CCCTCCTGTTACT
    A GGGTGGG AA  CC TG TGGAGAAG  GGGCACGTGCAAAG             
    | ||||||| ||  || || ||||||||  ||||||||||||||              
    T CCCACTC TT  GG AC ACCTCTTC  CTCGTGCACGTTTC             
TTGC -       C  -A  T  A        CC              CCCTTCCCTCTCC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Spipo26G0024500	0.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Spo-MIR164

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