Spo-MIR166a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
    G       TTT CT   A        TT      C      --TC  C     TC    -    ---      -           - ---    C    TCCT --C   T  -  CT
     GGAAGCT   C  TTG GGGGAATG  GTCTGG TCGAGG    TC CTCCT  CTCC ATCC   TTCTCC TCCTCATCGTC C   TTCT CCCG    C   GCC CC AG  
     |||||||   |  ||| ||||||||  |||||| ||||||    || |||||  |||| ||||   |||||| ||||||||||| |   |||| ||||    |   ||| || ||  T
     CCTTCGA   G  AAC CCCCTTAC  CGGACC GGCTCC    AG GAGGA  GAGG TAGG   AAGAGG AGGAGTAGCAG G   AAGA GGGT    G   TGG GG TC  
CGACA       --C CT   C        TT      A      TACT  A     --    C    TAA      G           A TTA    A    CTTT TCT   T  C  CC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Spipo1G0002900 1.0 NA NA
Spipo32G0009800 1.0 NA NA
Spipo5G0037000 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference