PmiREN: Plant microRNA Encyclopedia

Spo-MIR166b

Basic info.

miRNA locus ID
Spo-MIR166b

miRNA locus accession
PmiREN020146

Organism
Spirodela polyrhiza

Genomic location
Spo-pseudo16 835503 835670 -

Comments
A member of family MIR166

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  AGGAGGCTTTTTCA   A        TT      C        C      C        -     -     -TTT   TCGCTCT
                TTG GGGGAATG  GTCTGG TCGAGGCA GGTTCT CTCTTTCG TCTCT CTCTA    CCA       
                ||| ||||||||  |||||| |||||||| |||||| |||||||| ||||| |||||    |||        
                AAC CCCCTTAC  CGGACC GGCTCCGT CTAGGG GAGAAAGC AGGGA GAGGT    GGT       
CCATACCTACGACACT   C        TT      A        -      A        T     A     CTCT   CTCTTTC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Spipo1G0002900	1.0	NA	NA
Spipo32G0009800	1.0	NA	NA
Spipo5G0037000	1.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Spo-MIR166b

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