PmiREN: Plant microRNA Encyclopedia

Spo-MIR168b

Basic info.

miRNA locus ID
Spo-MIR168b

miRNA locus accession
PmiREN020151

Organism
Spirodela polyrhiza

Genomic location
Spo-pseudo11 302918 303078 +

Comments
A member of family MIR168

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GCCGCTGG          C   C          T     A    TG     ------       GTCACGGCCGCCGCTCCC
          CCGTCTCCAA TCG TTGGTGCAGG CGGGA CGGG  CCTCC      GCGGCCG                  
          |||||||||| ||| |||||||||| ||||| ||||  |||||      |||||||                  C
          GGCGGAGGTT AGT AACTACGTTC GCCCT GCCC  GGAGG      CGGGGGG                  
GCCTGGCGGA          A   C          C     C    TA     CCCTAA       TGGGGGATAAGATCGTCC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Spipo6G0031800	1.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Spo-MIR168b

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