Spo-MIR169a

Basic info.

• miRNA locus ID
• Spo-MIR169a

• miRNA locus accession
• PmiREN020154

• Organism
• Spirodela polyrhiza

• Genomic location
• Spo-pseudo0  10996729  10996860  +

• Comments
• A member of family MIR169

• Confidence level
• 

Secondary strurture and sequence

  AAGAGTCGGA     T    C                     -----C        CAAAT  A    TT
            GAGCA AGTG AGCCAAGGATGACTTGCCGGC      CCGGCTGA     GG GGGA  
            ||||| |||| |||||||||||||||||||||      ||||||||     || ||||   
            CTCGT TTAC TCGGTTCCTGTTGGACGGCCG      GGCCGGCT     CC TTCT  
TACTCTTCTTCC     T    A                     TTTACC        -----  G    GG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference