PmiREN: Plant microRNA Encyclopedia

Spo-MIR172a

Basic info.

miRNA locus ID
Spo-MIR172a

miRNA locus accession
PmiREN020163

Organism
Spirodela polyrhiza

Genomic location
Spo-pseudo1 1698547 1698677 +

Comments
A member of family MIR172

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  AAC     G  T    G C                   ACAT    CAGGCGATAAGTTCGTCAGA
     AGTCG TG TTGC G TGTGGCATCATCAAGATTC    GGAT                    
     ||||| || |||| | |||||||||||||||||||    ||||                     
     TCAGC GC AACG C ACGTCGTAGTAGTTCTAAG    GTAG                    
GTGAA     G  T    G T                   ---A    AGTCAATTGCTGCAAAGCTT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Spipo29G0019700	0.5	0	NA
Spipo5G0030900	0.5	0	NA

Mature miRNA conservation

Link

No link
No link

Reference

>Post-transcriptional adaptation of the aquatic plant Spirodela polyrhiza under stress and hormonal stimuli. Plant J, 2019