Spo-MIR172b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  CCCA      GT       C G                A  AGGTT   GA          ---------A      A T     G    TT
      GTCGCT  TTGCCGG G AGCATCATCAAGATTC CA     CTT  ATGGCCATTA          TCGTGG G GGATT TTCT  
      ||||||  ||||||| | |||||||||||||||| ||     |||  ||||||||||          |||||| | ||||| ||||  T
      CAGTGA  AACGGCT C TCGTAGTAGTTCTAAG GT     GAA  TGCCGGTAAT          AGCACC C TTTAG AAGA  
ATTTAA      AT       A G                A  --AGT   GC          AGCTGAGGTA      - T     -    CC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Spipo29G0019700 0.5 0 NA
Spipo5G0030900 0.5 0 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference