PmiREN: Plant microRNA Encyclopedia

Spo-MIR394

Basic info.

miRNA locus ID
Spo-MIR394

miRNA locus accession
PmiREN020166

Organism
Spirodela polyrhiza

Genomic location
Spo-pseudo1 4542122 4542253 +

Comments
A member of family MIR394

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 AGGGTATCTC          -      TTC           ----A  TT  -  GGAACTCCTTCAGA
           ACAGAGTCCA TTGGCA   TGTCCACCTCC     TG  GG AG              
           |||||||||| ||||||   |||||||||||     ||  || ||              A
           TGTCTTGGGT AACCGT   ACGGGTGGAGG     GG  GT TC              
TTCTCTTCGGC          C      CCT           CAGAA  --  G  CCAGAGGGAACCCC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Spipo4G0056500	1.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Spo-MIR394

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