PmiREN: Plant microRNA Encyclopedia

Spo-MIR396a

Basic info.

miRNA locus ID
Spo-MIR396a

miRNA locus accession
PmiREN020167

Organism
Spirodela polyrhiza

Genomic location
Spo-pseudo10 4158151 4158278 -

Comments
A member of family MIR396

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GAA  A       G   ATC          TTC         -     ----       CGCTCT
     GG CTCTCTT GTA   TTCCACAGCT   TTGAACTGC GTCTC    CCTCTCT      
     || ||||||| |||   ||||||||||   ||||||||| |||||    |||||||      C
     CC GAGGGAG CAT   AAGGTGTCGA   AACTTGGCG TAGAG    GGAGGGA      
TAACA  A       A   CAA          TAT         A     TCAA       CCCTTT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Spipo7G0055700	2.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Spo-MIR396a

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