Spo-MIR396c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   AC      T   GG   TTC                   G  G    -   ------    -    C   -    ---CCC         C        -C     C
     GAGATC CGA  ATG   TTCCACGGCTTTCTTGAAC GT TACT CGG      ACTG CAAC ACG CCGT      CTCTCTCTT CTTCGATC  CTGAC 
     |||||| |||  |||   ||||||||||||||||||| || |||| |||      |||| |||| ||| ||||      ||||||||| ||||||||  ||||| A
     TTCTAG GCT  TAC   AGGGTGCTGAAAGAACTTG CA ATGA GCT      TGAC GTTG TGT GGCA      GAGAGAGAG GGGGCTAG  GACTG 
TTTTC      -   AA   TAA                   G  G    C   GCGAGG    C    -   A    TTTAAA         A        CA     A

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Spipo1G0024400 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference