Spo-MIR396d

Basic info.

• miRNA locus ID
• Spo-MIR396d

• miRNA locus accession
• PmiREN020170

• Organism
• Spirodela polyrhiza

• Genomic location
• Spo-pseudo1  3062246  3062460  +

• Comments
• A member of family MIR396

• Confidence level
• 

Secondary strurture and sequence

  --C     C    GC   C                   A       CTT  AT   AA  -   -  ----           A   -------  TTCCTCTCCTTCACGTTGACA
 A   AAGAT GCGG  ATG TTTTCCACGGCTTTCTTGA CGGTGTA   GG  TGC  TC ATG CT    TCTCCCTCTTC CCT       TC                     
 |   ||||| ||||  ||| ||||||||||||||||||| |||||||   ||  |||  || ||| ||    ||||||||||| |||       ||                     G
 T   TTCTA CGCT  TAC GAAGGGTGCCGAAAGAACT GCCATAT   CC  ACG  AG TAC GG    AGAGGGAGAAG GGA       CG                     
T ACC     -    GC   A                   C       --C  --   GA  A   C  AATA           -   GAGAAAA  GGGGACGAGAGAGAGAGGAAG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference