Spo-MIR397

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
GGG      ---GG          C                A  AA      -C    GCGCCGCCA
   GGCCCG     TTAAAGGCAT ATTGAGTGCAGCGTTG TG  TCCGGC  GGCG         
   ||||||     |||||||||| |||||||||||||||| ||  ||||||  ||||         C
   CTGGGT     AGTTTTCGTA TAACTTACGTCGCGGC AC  GGGTCG  GGAG         
 GG      AGCTA          C                C  GG      AC    CGCCCCCTC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Spipo0G0020100 1.5 1 NA
Spipo22G0041800 1.5 NA NA
Spipo29G0025700 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference