PmiREN: Plant microRNA Encyclopedia

Spo-MIR408

Basic info.

miRNA locus ID
Spo-MIR408

miRNA locus accession
PmiREN020174

Organism
Spirodela polyrhiza

Genomic location
Spo-pseudo27 1398289 1398413 -

Comments
A member of family MIR408

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

TGAGGAA    --------- C  C T  A        C     A   T        TT  T       GC
       GGAG         G GA G AG CAGGGAAG GGTAG GCA GGGAAGGG  CA CAGCAAC  
       ||||         | || | || |||||||| ||||| ||| ||||||||  || |||||||  G
       CCTC         C CT C TC GTCCCTTC CCGTC CGT CCCTTCCT  GT GTCGTTG  
      A    AATCCCAAA A  C -  G        T     A   C        --  C       GT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Spipo0G0118400	1.0	0	NA
Spipo2G0072900	2.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Spo-MIR408

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