PmiREN: Plant microRNA Encyclopedia

Spo-MIR528

Basic info.

miRNA locus ID
Spo-MIR528

miRNA locus accession
PmiREN020175

Organism
Spirodela polyrhiza

Genomic location
Spo-pseudo17 196564 196705 -

Comments
A member of family MIR528

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  CTCTGAGGCGGCC     A     A    CAT         -  --C    C ----    --        - AC
               GCAGC GTGGA GGGG   GCAGAGGAG AG   GCCA C    GGCG  GCGCCGCC C  
               ||||| ||||| ||||   ||||||||| ||   |||| |    ||||  |||||||| |   
               CGTCG CACCT CCCC   CGTCTCCTC TC   CGGT G    CCGC  CGCGGCGG G  
GCGTGTCGCCGCCGA     G     A    TCC         C  CTT    C CCAC    CT        C AC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Spipo24G0019000	0.0	0	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Spo-MIR528

>