PmiREN: Plant microRNA Encyclopedia

Zos-MIR156c

Basic info.

miRNA locus ID
Zos-MIR156c

miRNA locus accession
PmiREN024275

Organism
Zostera marina

Genomic location
Zos-scaffold_17 961100 961222 +

Comments
A member of family MIR156

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

ACTGAGATCGAG  G   --       -       -          TC   T    T    AA
            TT GCT  GCTGACA GAAGAGA GTGAGCACAC  TGG GGTT CATA  
            || |||  ||||||| ||||||| ||||||||||  ||| |||| ||||  G
            GA CGA  CGACTGT CTTCTCT CACTCGTGTG  ATC TCGA GTAT  
AAGAATTTTCCT  G   AG       T       G          TC   T    C    GA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Zosma112g00280.1	1.0	1	NA
Zosma27g00800.1	1.0	1	NA
Zosma2g01340.1	1.0	1	NA
Zosma30g00280.1	1.5	2	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Zos-MIR156c

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