PmiREN: Plant microRNA Encyclopedia

Zos-MIR157

Basic info.

miRNA locus ID
Zos-MIR157

miRNA locus accession
PmiREN024278

Organism
Zostera marina

Genomic location
Zos-scaffold_324 33357 33479 +

Comments
A member of family MIR157

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 -     CT C    --TGCT          -              CT   C      TTAAGT
G GGGAG  G ACTG      GCTGACAGAA GATAGTGAGCACAC  CGG AATTTC      
| |||||  | ||||      |||||||||| ||||||||||||||  ||| ||||||       
C CCCTC  C TGGC      CGGCTGTCTT CTATCACTTGTGTG  GCC TTGAAG      
 A     -T T    CTCTTT          T              CT   T      TTTCTT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Zosma202g00330.1	2.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Zos-MIR157

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