PmiREN: Plant microRNA Encyclopedia

Zos-MIR160c

Basic info.

miRNA locus ID
Zos-MIR160c

miRNA locus accession
PmiREN024282

Organism
Zostera marina

Genomic location
Zos-scaffold_30 648570 648694 -

Comments
A member of family MIR160

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GATTGAAGCTAAGCTTGT     C       C          A    -    T     TTTG
                    TGTGC TGGCTCC TGTATGCCAC CATA TGGC GAATC    
                    ||||| ||||||| |||||||||| |||| |||| |||||     
                    ATACG ACCGAGG GCGTGCGGTG GTGT ACTG TTTAG    
ATCATTCATTTATTCATTCC     A       A          G    T    T     TTGT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Zosma202g00360.1	0.0	NA	NA
Zosma94g00330.1	0.0	NA	NA
Zosma41g00710.1	0.5	NA	NA
Zosma54g00300.1	0.5	0	NA

Mature miRNA conservation

Link

Reference

No reference

Zos-MIR160c

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