PmiREN: Plant microRNA Encyclopedia

Zos-MIR164c

Basic info.

miRNA locus ID
Zos-MIR164c

miRNA locus accession
PmiREN024285

Organism
Zostera marina

Genomic location
Zos-scaffold_183 21772 21908 -

Comments
A member of family MIR164

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 T  -       C  G  TT          CA   C       AGGCT      ----     CCT  A     AC
  TC AGGTGAG AG TC  GTTGGAGAAG  GGG ACGTGCA     TATTCA    ATCTA   AC TAGCT  
  || ||||||| || ||  ||||||||||  ||| |||||||     ||||||    |||||   || |||||   
  AG TCCACTC TT AG  CAACCTCTTC  CTC TGCACGT     ATAAGT    TAGAT   TG ATCGA  
CT  C       C  G  TT          CC   A       -----      CTAC     ---  -     CC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Zosma159g00120.1	0.5	1	NA
Zosma538g00050.1	1.0	NA	NA
Zosma117g00720.1	1.5	0	NA
Zosma185g00380.1	2.0	NA	NA
Zosma30g01030.1	2.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Zos-MIR164c

>