PmiREN: Plant microRNA Encyclopedia

Zos-MIR164d

Basic info.

miRNA locus ID
Zos-MIR164d

miRNA locus accession
PmiREN024286

Organism
Zostera marina

Genomic location
Zos-scaffold_538 35274 35382 -

Comments
A member of family MIR164

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  GTA     A    TT  C          CA         CATT   CG     G
     AGGTG GGTG  CA GATGGAGAAG  GGGTACGTG    GCC  TCCAA 
     ||||| ||||  || ||||||||||  |||||||||    |||  ||||| G
     TCCAC CCAC  GT CTACCTCTTC  CCCGTGTAC    TGG  AGGTT 
ATGTG     G    CC  C          TA         TTCT   --     T

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Zosma538g00050.1	0.0	NA	NA
Zosma159g00120.1	1.0	2	NA
Zosma149g00280.1	1.5	2	NA
Zosma117g00720.1	2.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Zos-MIR164d

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