PmiREN: Plant microRNA Encyclopedia

Zos-MIR166c

Basic info.

miRNA locus ID
Zos-MIR166c

miRNA locus accession
PmiREN024289

Organism
Zostera marina

Genomic location
Zos-scaffold_24 1016054 1016222 -

Comments
A member of family MIR166

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

    A     TTTTTCT    A        TT      C        ----------     ----T       TCCGTT    AA   A    TC
     GGAAG       GTTG GGGGAATG  GTTTGG TCGAGGTT          TCTTC     TCCTCAC      TCTC  TCG TCGA  
     |||||       |||| ||||||||  |||||| ||||||||          |||||     |||||||      ||||  ||| ||||   
     CCTTC       TAAC CCCCTTAC  CGGACC GGCTCTAG          AGAGG     AGGAGTG      AGAG  AGC AGCT  
TTTTG     --TACGC    C        TT      A        ATATGCTAAG     CAACT       ---TTT    CC   C    AG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Zosma107g00860.1	0.0	NA	NA
Zosma5g01920.1	0.5	NA	NA
Zosma30g00880.1	1.0	NA	NA
Zosma85g00180.1	2.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Zos-MIR166c

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