PmiREN: Plant microRNA Encyclopedia

Zos-MIR166e

Basic info.

miRNA locus ID
Zos-MIR166e

miRNA locus accession
PmiREN024291

Organism
Zostera marina

Genomic location
Zos-scaffold_82 622015 622137 -

Comments
A member of family MIR166

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

 TCTGGCTTT   -    G      C  TT      C          C       ------   T
          TGT GGTT AGGGGA TG  GTCTGG TCGAGGTCAT TAGATAT      GCA 
          ||| |||| |||||| ||  |||||| |||||||||| |||||||      ||| G
          ACG CCAA TCTCCT AC  CGGACC GGCTCTAGTG ATCTGTA      CGT 
TAAGTCGTTT   T    A      T  TT      A          T       GCTTAT   T

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Zosma107g00860.1	0.0	NA	NA
Zosma5g01920.1	0.5	NA	NA
Zosma30g00880.1	1.0	NA	NA
Zosma85g00180.1	2.0	2	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Zos-MIR166e

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