PmiREN: Plant microRNA Encyclopedia

Zos-MIR168

Basic info.

miRNA locus ID
Zos-MIR168

miRNA locus accession
PmiREN024295

Organism
Zostera marina

Genomic location
Zos-scaffold_2 1083425 1083566 -

Comments
A member of family MIR168

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  AAC    CG    C         C          T             CT   ---   -T    -    TCA
     TCGC  TCGT TCTGATTTG TTGGTGCAGG CGGGAAGAGAAGA  GGC   TCC  TCCG TTCG   
     ||||  |||| ||||||||| |||||||||| |||||||||||||  |||   |||  |||| ||||    
     AGCG  GGCA AGGCTAAGC AACTACGTTT GTCCTTCTTTTCT  TTG   AGG  AGGC AGGC   
TAGTC    TA    T         C          T             -T   TTT   CT    T    TAG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Zosma25g01490.1	1.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Zos-MIR168

>